Initial fixed huffman coding for png.

src/compression/CMakeLists.txt

@@ -1,7 +1,10 @@
 
 list(APPEND compression_LIB_INCLUDES 
     StreamCompressor.cpp
-    HuffmanEncoder.cpp
+    huffman/HuffmanEncoder.cpp
+    huffman/HuffmanStream.cpp
+    huffman/HuffmanCodeLengthTable.cpp
+    huffman/HuffmanTree.cpp
     RunLengthEncoder.cpp
     ZlibEncoder.cpp
     deflate/DeflateEncoder.cpp
@@ -15,6 +18,7 @@ add_library(compression SHARED ${compression_LIB_INCLUDES})
 target_include_directories(compression PUBLIC
                           ${CMAKE_CURRENT_SOURCE_DIR}
                           ${CMAKE_CURRENT_SOURCE_DIR}/deflate
+                          ${CMAKE_CURRENT_SOURCE_DIR}/huffman
                           )
                           
 target_link_libraries(compression PUBLIC core)

src/compression/HuffmanEncoder.h

@@ -1,21 +0,0 @@
-#pragma once
-
-#include "RawTree.h"
-
-#include <vector>
-#include <unordered_map>
-
-class HuffmanEncoder
-{
-using DataStream = std::vector<unsigned char>;
-using CountPair = std::pair<unsigned char, unsigned>;
-
-public:
-    void encode(const DataStream& stream);
-
-    void encode(const std::unordered_map<unsigned char, unsigned>& counts);
-
-private:
-    void dumpTree(const RawTree<CountPair>& tree) const;
-    void dumpNode(RawNode<CountPair>* node, unsigned depth) const;
-};

src/compression/Lz77Encoder.cpp

@@ -2,6 +2,10 @@
 
 #include "StringUtils.h"
 #include "BitStream.h"
+#include "ByteUtils.h"
+#include "HuffmanEncoder.h"
+
+#include <iostream>
 
 Lz77Encoder::Lz77Encoder(BitStream* inputStream, BitStream* outputStream)
     : AbstractEncoder(inputStream, outputStream)
@@ -61,8 +65,39 @@ void Lz77Encoder::lookThroughSearchBuffer(char searchChar, unsigned& hitLength,
     }
 }
 
+void Lz77Encoder::setPrefixCodeGenerator(std::unique_ptr<PrefixCodeGenerator> generator)
+{
+    mCodeGenerator = std::move(generator);
+}
+
 bool Lz77Encoder::encode()
 {
+    if (!mCodeGenerator)
+    {
+        auto code_generator = std::make_unique<HuffmanEncoder>();
+        auto huffman_encoder = code_generator.get();
+
+        mCodeGenerator = std::move(code_generator);
+        huffman_encoder->setUseFixedCode(true);
+        huffman_encoder->initializeLiteralLengthTable();
+    }
+
+    while(auto byte = mInputStream->readNextByte())
+    {
+        const auto code = mCodeGenerator->getLiteralValue(*byte);
+
+        std::cout << "Writing value " << static_cast<int>(*byte) << " with code " << ByteUtils::toString(code.getData(), code.getLength()) << "\n";
+
+        mOutputStream->writeNBits(code.getData(), code.getLength());
+    }
+
+    auto eos_code = mCodeGenerator->getEndOfStreamValue();
+    std::cout << "Writing EOS value with code " << ByteUtils::toString(eos_code.getData(), eos_code.getLength()) << "\n";
+
+    mOutputStream->writeNBits(eos_code.getData(), eos_code.getLength());
+
+
+
     /*
     unsigned loc{0};
     std::string ret;

src/compression/Lz77Encoder.h

@@ -1,9 +1,13 @@
 #pragma once
 
 #include "AbstractEncoder.h"
+#include "HuffmanEncoder.h"
 
 #include <string>
 #include <vector>
+#include <memory>
+
+class PrefixCodeGenerator;
 
 class Lz77Encoder : public AbstractEncoder
 {
@@ -24,10 +28,14 @@ public:
 
     void setLookAheadBufferSize(unsigned size);
 
+    void setPrefixCodeGenerator(std::unique_ptr<PrefixCodeGenerator> generator);
+
 private:
     unsigned mSearchBufferSize{32000};
     Buffer mSearchBuffer;
 
     unsigned mLookAheadBufferSize{256};
     Buffer mLookaheadBuffer;
+
+    std::unique_ptr<PrefixCodeGenerator> mCodeGenerator;
 };

src/compression/RunLengthEncoder.cpp

@@ -0,0 +1,54 @@
+#include "RunLengthEncoder.h"
+
+std::vector<RunLengthEncoder::Hit> RunLengthEncoder::encode(const std::vector<unsigned char>& input)
+{
+    std::vector<RunLengthEncoder::Hit> ret;
+    if (input.empty())
+    {
+        return ret;
+    }
+
+    char working_char{0};
+    unsigned count = 1;
+    for(unsigned idx=0; idx<input.size(); idx++)
+    {
+        auto c = input[idx];
+        if (idx == 0)
+        {
+            working_char = c;
+            continue;
+        }
+
+        if (c == working_char)
+        {
+            count++;
+        }
+        else
+        {
+            ret.push_back({working_char, count});
+            working_char = c;
+            count = 1;
+        }
+    }
+    ret.push_back({working_char, count});
+    return ret;
+}
+
+std::vector<unsigned char> RunLengthEncoder::decode(const std::vector<RunLengthEncoder::Hit>& input)
+{
+    std::vector<unsigned char> ret;
+    if (input.empty())
+    {
+        return ret;
+    }
+
+    for (const auto& hit : input)
+    {
+        for(unsigned idx=0; idx< hit.second; idx++)
+        {
+            ret.push_back(hit.first);
+        }
+    }
+    return ret;
+}
+

src/compression/RunLengthEncoder.h

@@ -1,110 +1,15 @@
 #pragma once
 
-#include "StringUtils.h"
-
 #include <vector>
-#include <string>
 
 class RunLengthEncoder
 {
 public:
-    std::string encode(const std::string& string)
+    using Hit = std::pair<unsigned char, unsigned>;
-    {
-        std::string ret;
-        if (string.empty())
-        {
-            return ret;
-        }
 
-        char working_char{0};
+    std::vector<Hit> encode(const std::vector<unsigned char>& input);
-        unsigned count = 1;
-        for(unsigned idx=0; idx<string.size(); idx++)
-        {
-            auto c = string[idx];
-            if (idx == 0)
-            {
-                working_char = c;
-                continue;
-            }
 
-            if (c == working_char)
+    std::vector<unsigned char> decode(const std::vector<Hit>& input);
-            {
-                count++;
-            }
-            else
-            {
-                insertCharacter(ret, working_char, count);
-                working_char = c;
-                count = 1;
-            }
-        }
-        insertCharacter(ret, working_char, count);
-
-        return ret;
-    }
-
-    std::string decode(const std::string& string)
-    {
-        std::string ret;
-        if (string.empty())
-        {
-            return ret;
-        }
-
-        unsigned count{0};
-        while(count < string.size())
-        {
-            auto c = string[count];
-            if (c == mDelimiter)
-            {
-                count++;
-                std::string reps;
-                char working_char{0};
-                while(count < string.size())
-                {
-                    auto rep_char = string[count];
-                    count++;
-                    if (StringUtils::IsAlphabetical(rep_char))
-                    {
-                        working_char = rep_char;
-                        break;
-                    }
-                    else
-                    {
-                        reps += rep_char;
-                    }
-                }
-                for (unsigned idx=0; idx<std::stoul(reps); idx++)
-                {
-                    ret += working_char;
-                }
-            }
-            else
-            {
-                ret += c;
-                count++;
-            }
-        }
-        return ret;
-    }
 
 private:
-
-    void insertCharacter(std::string& output, char c, unsigned count)
-    {
-        if (count >= 3)
-        {
-            output += mDelimiter + std::to_string(count) + c;
-        }
-        else
-        {
-            for (unsigned jdx=0;jdx<count; jdx++)
-            {
-                output += c;
-            }
-        }
-    }
-
-    char mDelimiter {'@'};
-
 };

src/compression/ZlibEncoder.h

@@ -30,6 +30,10 @@ public:
     ~ZlibEncoder();
 
     void setWindowSize(unsigned size);
+    void setDeflateCompressionMethod(Deflate::CompressionMethod method)
+    {
+        mDeflateCompressionMethod = method;
+    }
 
     bool encode() override;
     bool decode() override;

src/compression/deflate/DeflateBlock.cpp

@@ -14,218 +14,6 @@ DeflateBlock::DeflateBlock(BitStream* inputStream, BitStream* outputStream)
 
 }
 
-bool DeflateBlock::readNextCodeLengthSymbol(unsigned char& final_symbol)
-{
-    unsigned working_index{0};
-    auto count = mCodeLengthMapping[working_index].first;
-    auto delta = count;
-
-    bool found{false};
-    unsigned char buffer{0};
-    unsigned char working_bits{0};
-    unsigned working_symbol{0};
-
-    while(!found)
-    {
-        auto valid = mInputStream->readNextNBits(delta, buffer);
-        working_bits = (working_bits << delta) | buffer;
-
-        for(const auto& entry : mCodeLengthMapping[working_index].second)
-        {
-            if (entry.first == working_bits)
-            {
-                found = true;
-                working_symbol = entry.second;
-                break;
-            }
-        }
-
-        if (!found)
-        {
-            working_index++;
-            if (working_index >= mCodeLengthMapping.size())
-            {
-                break;
-            }
-
-            auto new_count = mCodeLengthMapping[working_index].first;
-            delta = new_count - count;
-            count = new_count;
-        }
-    }
-
-    if (found)
-    {
-        final_symbol = working_symbol;
-        std::cout << "Found symbol " << working_symbol << " with bits " << ByteUtils::toString(working_bits) << std::endl;
-        std::cout << "At Byte offset " << mInputStream->getCurrentByteOffset() << " and bit offset " << mInputStream->getCurrentBitOffset() << std::endl;
-        return true;
-    }
-    else
-    {
-        std::cout << "SYMBOL NOT FOUND " << " with bits " << ByteUtils::toString(working_bits) << std::endl;
-        return false;
-    }
-}
-
-void DeflateBlock::setCodeLengthAlphabetLengths(const std::vector<unsigned char>& lengths)
-{
-    mCodeLengthAlphabetLengths = lengths;
-}
-
-void DeflateBlock::setCodeLengthLength(unsigned length)
-{
-    mHclen = length;
-}
-
-void DeflateBlock::setLiteralsTableLength(unsigned length)
-{
-    mHlit = length;
-}
-
-void DeflateBlock::setDistanceTableLength(unsigned length)
-{
-    mHdist = length;
-}
-
-void DeflateBlock::setIsFinalBlock(bool isFinal)
-{
-    mInFinalBlock = isFinal;
-}
-
-void DeflateBlock::flushToStream()
-{
-
-}
-
-void DeflateBlock::readLiteralCodeLengths()
-{
-    std::vector<unsigned> lengths;
-    unsigned char symbol{0};
-
-    while(lengths.size() < mHlit)
-    {
-        bool valid = readNextCodeLengthSymbol(symbol);
-
-        if (!valid)
-        {
-            std::cout << "Hit unknown symbol - bailing out" << std::endl;
-            break;
-        }
-
-        if (symbol < 16)
-        {
-            lengths.push_back(symbol);
-        }
-        else if(symbol == 16)
-        {
-            unsigned char num_reps{0};
-            mInputStream->readNextNBits(2, num_reps);
-
-            auto last_val = lengths[lengths.size()-1];
-            std::cout << "Got val 16 doing " << 3 + num_reps << std::endl;
-            for(unsigned idx=0; idx< 3 + num_reps; idx++)
-            {
-                lengths.push_back(last_val);
-            }
-        }
-        else if(symbol == 17)
-        {
-            unsigned char num_reps{0};
-            mInputStream->readNextNBits(3, num_reps);
-
-            std::cout << "Got val 17 doing " << 3 + num_reps << std::endl;
-            for(unsigned idx=0; idx< 3 + num_reps; idx++)
-            {
-                lengths.push_back(0);
-            }
-        }
-        else if(symbol == 18)
-        {
-            unsigned char num_reps{0};
-            mInputStream->readNextNBits(7, num_reps);
-
-            std::cout << "Got val 18 doing " << 11 + num_reps << std::endl;
-            for(unsigned idx=0; idx< 11 + num_reps; idx++)
-            {
-                lengths.push_back(0);
-            }
-        }
-    }
-}
-
-void DeflateBlock::buildCodeLengthMapping()
-{
-    for(unsigned idx=1; idx<8; idx++)
-    {
-        std::vector<unsigned> entries;
-        for(unsigned jdx=0; jdx<mCodeLengthAlphabetLengths.size(); jdx++)
-        {
-            if (mCodeLengthAlphabetLengths[jdx] == idx)
-            {
-                entries.push_back(jdx);
-            }
-        }
-
-        if (entries.empty())
-        {
-            continue;
-        }
-
-        CodeLengthCountEntry count_entry{idx, {}};
-        std::sort(entries.begin(), entries.end());
-
-        unsigned char offset = 0x01 << idx - 1;
-        unsigned char count{0};
-        for (auto entry : entries)
-        {
-            count_entry.second.push_back(CodeLengthEntry{offset + count, entry});
-            count++;
-        }
-        mCodeLengthMapping.push_back(count_entry);
-    }
-
-    for (const auto& map_data : mCodeLengthMapping)
-    {
-        std::cout << "Map entry " << map_data.first << " has vals: "  << std::endl;
-        for (const auto& entry : map_data.second)
-        {
-            std::cout << "Key " << ByteUtils::toString(entry.first) << " val: " << entry.second << std::endl;
-        }
-    }
-}
-
-void DeflateBlock::readDynamicHuffmanTable()
-{
-    unsigned char h_lit{0};
-    mInputStream->readNextNBits(5, h_lit);
-    mHlit = h_lit + 257;
-    std::cout << "Got HLIT " << mHlit << std::endl;
-
-    unsigned char h_dist{0};
-    mInputStream->readNextNBits(5, h_dist);
-    mHdist = h_dist + 1;
-    std::cout << "Got HDIST " << mHdist << std::endl;
-
-    unsigned char h_clen{0};
-    mInputStream->readNextNBits(4, h_clen);
-    mHclen = h_clen + 4;
-    std::cout << "Got HCLEN " << mHclen << std::endl;
-
-    mCodeLengthAlphabetLengths = std::vector<unsigned char>(19, 0);
-    unsigned char buffer{0};
-    for(unsigned idx = 0; idx< mHclen; idx++)
-    {
-        mInputStream->readNextNBits(3, buffer);
-        mCodeLengthAlphabetLengths[CODE_LENGTH_ALPHABET_PERMUTATION[idx]] = buffer;
-        std::cout << "Got code length for " << CODE_LENGTH_ALPHABET_PERMUTATION[idx] << " of " << static_cast<unsigned>(buffer) << std::endl;
-    }
-
-    buildCodeLengthMapping();
-
-    readLiteralCodeLengths();
-}
-
 std::string DeflateBlock::getMetaData() const
 {
     std::stringstream sstr;
@@ -237,6 +25,11 @@ std::string DeflateBlock::getMetaData() const
     return sstr.str();
 }
 
+void DeflateBlock::setIsFinalBlock(bool isFinal)
+{
+    mInFinalBlock = isFinal;
+}
+
 bool DeflateBlock::isFinalBlock() const
 {
     return mInFinalBlock;
@@ -245,7 +38,9 @@ bool DeflateBlock::isFinalBlock() const
 bool DeflateBlock::read()
 {
     auto working_byte = *mInputStream->readNextByte();
-    std::cout << "Into process data, starts with: "<< ByteUtils::toString(working_byte) << std::endl;
+
+    std::cout << mInputStream->logNextNBytes(11);
+    std::cout << "DeflateBlock::read location " << mInputStream->logLocation();
 
     unsigned char final_block{0};
     mInputStream->readNextNBits(1, final_block);
@@ -257,35 +52,64 @@ bool DeflateBlock::read()
 
     if (mCompressionMethod == Deflate::CompressionMethod::NONE)
     {
-        auto byte0 = *mInputStream->readNextByte();
+        return readUncompressedStream();
-        auto byte1 = *mInputStream->readNextByte();
-        mUncompressedBlockLength = (byte0 << 8) | byte1;
-
-        std::cout << "Check block 0: " << ByteUtils::toString(byte0) << std::endl;
-        std::cout << "Check block 1: " << ByteUtils::toString(byte1) << std::endl;
-
-        auto byte2 = *mInputStream->readNextByte();
-        auto byte3 = *mInputStream->readNextByte();
-        uint16_t len_check = (byte2 << 8) | byte3;
-
-        std::cout << "Check block 2: " << ByteUtils::toString(byte2) << std::endl;
-        std::cout << "Check block 3: " << ByteUtils::toString(byte3) << std::endl;
-        //if (!(byte0 ==(~byte2) && byte1 ==(~byte3)))
-        //{
-            //std::cout << "Uncompressed block length check failed - aborting." << std::endl;
-            //return false;
-        //}
-        //else
-        //{
-            for(unsigned idx=0; idx<mUncompressedBlockLength;idx++)
-            {
-                mOutputStream->writeByte(*mInputStream->readNextByte());
-            }
-        //}
     }
+    else if(mCompressionMethod == Deflate::CompressionMethod::FIXED_HUFFMAN)
+    {
+        return readFixedHuffmanStream();
+    }
+    else if(mCompressionMethod == Deflate::CompressionMethod::DYNAMIC_HUFFMAN)
+    {
+        return readDynamicHuffmanStream();
+    }
+    return false;
+}
+
+bool DeflateBlock::readUncompressedStream()
+{
+    auto byte0 = *mInputStream->readNextByte();
+    auto byte1 = *mInputStream->readNextByte();
+    mUncompressedBlockLength = (byte0 << 8) | byte1;
+
+    std::cout << "Check block 0: " << ByteUtils::toString(byte0) << std::endl;
+    std::cout << "Check block 1: " << ByteUtils::toString(byte1) << std::endl;
+
+    auto byte2 = *mInputStream->readNextByte();
+    auto byte3 = *mInputStream->readNextByte();
+    uint16_t len_check = (byte2 << 8) | byte3;
+
+    std::cout << "Check block 2: " << ByteUtils::toString(byte2) << std::endl;
+    std::cout << "Check block 3: " << ByteUtils::toString(byte3) << std::endl;
+    //if (!(byte0 ==(~byte2) && byte1 ==(~byte3)))
+    //{
+        //std::cout << "Uncompressed block length check failed - aborting." << std::endl;
+        //return false;
+    //}
+    //else
+    //{
+        for(unsigned idx=0; idx<mUncompressedBlockLength;idx++)
+        {
+            mOutputStream->writeByte(*mInputStream->readNextByte());
+        }
+    //}
     return true;
 }
 
+bool DeflateBlock::readFixedHuffmanStream()
+{
+    std::cout << "Reading fixed huffman stream" << std::endl;
+    mHuffmanStream = std::make_unique<HuffmanStream>(mInputStream, mOutputStream);
+
+    mHuffmanStream->generateFixedCodeMapping();
+    return mHuffmanStream->decode();
+}
+
+bool DeflateBlock::readDynamicHuffmanStream()
+{
+    mHuffmanStream = std::make_unique<HuffmanStream>(mInputStream, mOutputStream);
+    return mHuffmanStream->decode();
+}
+
 void DeflateBlock::write(uint16_t datalength)
 {
     mUncompressedBlockLength = datalength;
@@ -296,20 +120,38 @@ void DeflateBlock::write(uint16_t datalength)
 
     if (mCompressionMethod == Deflate::CompressionMethod::NONE)
     {
-        std::cout << "Writing compression block header " << ByteUtils::toString(working_block) << std::endl;
+        writeUncompressedStream(working_block, datalength);
-        mOutputStream->writeByte(working_block);
+    }
-
+    else if (mCompressionMethod == Deflate::CompressionMethod::FIXED_HUFFMAN)
-        std::cout << "Writing data length " << mUncompressedBlockLength << " " << ByteUtils::toString(mUncompressedBlockLength) << std::endl;
+    {
-        mOutputStream->writeWord(datalength);
+        mOutputStream->writeNBits(working_block, 3);
-
+        while(auto byte = mInputStream->readNextByte())
-        std::cout << "Writing iverse data length " << ~mUncompressedBlockLength << " " << ByteUtils::toString(~mUncompressedBlockLength) << std::endl;
-        mOutputStream->writeWord(static_cast<uint16_t>(~mUncompressedBlockLength));
-
-        for(unsigned idx=0; idx<mUncompressedBlockLength;idx++)
         {
-            auto byte = *mInputStream->readNextByte();
+            mOutputStream->writeByte(*byte);
-            //std::cout << "Writing next byte " << static_cast<int>(byte) << std::endl;
+        }
-            mOutputStream->writeByte(byte);
+
+        if (const auto& remaining_bits = mInputStream->getRemainingBits(); remaining_bits.second > 0)
+        {
+            mOutputStream->writeNBits(remaining_bits.first, remaining_bits.second);
         }
     }
 }
+
+void DeflateBlock::writeUncompressedStream(unsigned char working_byte, uint16_t datalength)
+{
+    std::cout << "Writing compression block header " << ByteUtils::toString(working_byte) << std::endl;
+    mOutputStream->writeByte(working_byte);
+
+    std::cout << "Writing data length " << mUncompressedBlockLength << " " << ByteUtils::toString(mUncompressedBlockLength) << std::endl;
+    mOutputStream->writeWord(datalength);
+
+    std::cout << "Writing iverse data length " << ~mUncompressedBlockLength << " " << ByteUtils::toString(~mUncompressedBlockLength) << std::endl;
+    mOutputStream->writeWord(static_cast<uint16_t>(~mUncompressedBlockLength));
+
+    for(unsigned idx=0; idx<mUncompressedBlockLength;idx++)
+    {
+        auto byte = *mInputStream->readNextByte();
+        //std::cout << "Writing next byte " << static_cast<int>(byte) << std::endl;
+        mOutputStream->writeByte(byte);
+    }
+}

src/compression/deflate/DeflateBlock.h

@@ -1,9 +1,12 @@
 #pragma once
 
 #include "DeflateElements.h"
+#include "HuffmanStream.h"
 
 #include "BitStream.h"
 
+#include <memory>
+
 class AbstractChecksumCalculator;
 
 class DeflateBlock
@@ -11,51 +14,33 @@ class DeflateBlock
 public:
     DeflateBlock(BitStream* inputStream, BitStream* outputStream);
 
-    void buildCodeLengthMapping();
-
     std::string getMetaData() const;
 
-    void flushToStream();
-
     bool isFinalBlock() const;
 
     bool read();
 
-    void readDynamicHuffmanTable();
-
-    void readLiteralCodeLengths();
-
-    bool readNextCodeLengthSymbol(unsigned char& buffer);
-
-    void setCodeLengthAlphabetLengths(const std::vector<unsigned char>& lengths);
-
-    void setCodeLengthLength(unsigned length);
-
-    void setLiteralsTableLength(unsigned length);
-
-    void setDistanceTableLength(unsigned length);
-
     void setIsFinalBlock(bool isFinal);
+    void setCompressionMethod(Deflate::CompressionMethod method)
+    {
+        mCompressionMethod = method;
+    }
 
     void write(uint16_t datalength);
 
 private:
+    bool readUncompressedStream();
+    bool readFixedHuffmanStream();
+    bool readDynamicHuffmanStream();
+
+    void writeUncompressedStream(unsigned char working_byte, uint16_t datalength);
+
     BitStream* mInputStream;
     BitStream* mOutputStream;
 
-    unsigned mHlit{0};
+    std::unique_ptr<HuffmanStream> mHuffmanStream;
-    unsigned mHdist{0};
-    unsigned mHclen{0};
-
     uint16_t mUncompressedBlockLength{0};
 
-    using CodeLengthEntry = std::pair<unsigned char, unsigned>;
-    using CodeLengthCountEntry = std::pair<unsigned, std::vector<CodeLengthEntry> >;
-    std::vector<CodeLengthCountEntry> mCodeLengthMapping;
-
-    std::vector<unsigned char> mCodeLengthAlphabetLengths;
-    static constexpr unsigned CODE_LENGTH_ALPHABET_PERMUTATION[19]{16, 17, 18, 0, 8, 7, 9, 6, 10, 5, 11, 4, 12, 3, 13, 2, 14, 1, 15};
-
     bool mInFinalBlock{false};
     Deflate::CompressionMethod mCompressionMethod{Deflate::CompressionMethod::NONE};
 };

src/compression/deflate/DeflateEncoder.cpp

@@ -1,6 +1,7 @@
 #include "DeflateEncoder.h"
 
 #include "BitStream.h"
+#include "ByteUtils.h"
 #include "DeflateBlock.h"
 #include "BufferBitStream.h"
 
@@ -22,6 +23,7 @@ bool DeflateEncoder::encode()
     uint16_t count = 0;
     BufferBitStream stream;
     std::unique_ptr<DeflateBlock> working_block = std::make_unique<DeflateBlock>(&stream, mOutputStream);
+    working_block->setCompressionMethod(mCompressionMethod);
 
     AbstractChecksumCalculator* checksum_calc;
     if (mChecksumCalculators.size() > 0)
@@ -38,15 +40,22 @@ bool DeflateEncoder::encode()
             working_block->write(count);
 
             working_block = std::make_unique<DeflateBlock>(&stream, mOutputStream);
+            working_block->setCompressionMethod(mCompressionMethod);
             stream.reset();
         }
 
         if (auto byte = mInputStream->readNextByte())
         {
+            std::cout << "Adding byte " << ByteUtils::toString(*byte) << " to deflate block input" << std::endl;
             stream.writeByte(*byte);
         }
         else
         {
+            if (const auto& remaining_bits = mInputStream->getRemainingBits(); remaining_bits.second > 0)
+            {
+                stream.writeNBits(remaining_bits.first, remaining_bits.second);
+            }
+
             stream.resetOffsets();
             working_block->setIsFinalBlock(true);
 
@@ -56,7 +65,7 @@ bool DeflateEncoder::encode()
         }
         count++;
     }
-
+    mOutputStream->flushRemainingBits();
     mOutputStream->clearChecksumCalculator();
     return true;
 }

src/compression/huffman/HuffmanCodeLengthTable.cpp

@@ -0,0 +1,175 @@
+#include "HuffmanCodeLengthTable.h"
+
+#include "ByteUtils.h"
+#include "RunLengthEncoder.h"
+
+#include <algorithm>
+#include <sstream>
+#include <iostream>
+
+void HuffmanCodeLengthTable::buildCompressedLengthSequence()
+{
+    RunLengthEncoder rl_encoder;
+    auto rle_encoded = rl_encoder.encode(mInputLengthSequence);
+
+    for (const auto& entry : rle_encoded)
+    {
+        std::cout << "Got rle " << static_cast<int>(entry.first) << " | " << entry.second << std::endl;
+    }
+    mCompressedLengthSequence.clear();
+
+    for (const auto& entry : rle_encoded)
+    {
+        const auto length = entry.first;
+        const auto count = entry.second;
+        if (count < 3)
+        {
+            for(unsigned idx=0; idx<3; idx++)
+            {
+                mCompressedLengthSequence.push_back({length, 0});
+            }
+        }
+        else if (length == 0)
+        {
+            if(count >=3 && count <=10)
+            {
+                mCompressedLengthSequence.push_back({17, count-3});
+            }
+            else
+            {
+                mCompressedLengthSequence.push_back({18, count-11});
+            }
+        }
+        else
+        {
+            mCompressedLengthSequence.push_back({length, 0});
+            auto num_blocks_of_six = (count-1)/6;
+            for(unsigned idx=0; idx<num_blocks_of_six; idx++)
+            {
+                mCompressedLengthSequence.push_back({16, 3});
+            }
+            auto remaining_counts = (count-1) % 6;
+            if (remaining_counts >= 3)
+            {
+                mCompressedLengthSequence.push_back({16, remaining_counts - 3});
+            }
+            else
+            {
+                for(unsigned idx=0; idx<remaining_counts; idx++)
+                {
+                    mCompressedLengthSequence.push_back({length, 0});
+                }
+            }
+        }
+    }
+
+    mCompressedLengthCounts = std::vector<unsigned>(19, 0);
+    for (const auto& entry : mCompressedLengthSequence)
+    {
+        mCompressedLengthCounts[entry.first]++;
+    }
+}
+
+const std::vector<HuffmanCodeLengthTable::CompressedSequenceEntry>& HuffmanCodeLengthTable::getCompressedLengthSequence() const
+{
+    return mCompressedLengthSequence;
+}
+
+const std::vector<unsigned> HuffmanCodeLengthTable::getCompressedLengthCounts() const
+{
+    return mCompressedLengthCounts;
+}
+
+void HuffmanCodeLengthTable::buildPrefixCodes()
+{
+    if(mInputLengthSequence.empty())
+    {
+        return;
+    }
+
+    unsigned char max_length = *std::max_element(mInputLengthSequence.begin(), mInputLengthSequence.end());
+    std::vector<unsigned> counts(max_length+1, 0);
+    for (const auto length : mInputLengthSequence)
+    {
+        counts[length]++;
+    }
+    counts[0] = 0;
+
+    uint32_t code{0};
+    std::vector<uint32_t> next_code(max_length + 1, 0);
+    for (unsigned bits = 1; bits <= max_length; bits++)
+    {
+        code = (code + counts[bits-1]) << 1;
+        next_code[bits] = code;
+    }
+
+    for(std::size_t idx=0; idx<mInputLengthSequence.size(); idx++)
+    {
+        if (const auto length = mInputLengthSequence[idx]; length != 0)
+        {
+            const auto code = next_code[length];
+            next_code[length]++;
+            auto prefix_code = PrefixCode(code, length);
+            mTree.addCodeLengthEntry(length, {PrefixCode(code, length), idx});
+            mCodes.push_back(prefix_code);
+        }
+    }
+    mTree.sortTable();
+    //std::cout << dumpPrefixCodes();
+}
+
+const PrefixCode& HuffmanCodeLengthTable::getCode(std::size_t index) const
+{
+    return mCodes[index];
+}
+
+std::string HuffmanCodeLengthTable::dumpPrefixCodes() const
+{
+    return mTree.dump();
+}
+
+unsigned HuffmanCodeLengthTable::mapToDeflateIndex(unsigned index) const
+{
+    if (index>= DEFLATE_PERMUTATION_SIZE)
+    {
+        return 0;
+    }
+    else
+    {
+        return DEFLATE_PERMUTATION[index];
+    }
+}
+
+unsigned HuffmanCodeLengthTable::getNumCodeLengths() const
+{
+    return mTree.getNumCodeLengths();
+}
+
+std::optional<HuffmanTree::Symbol> HuffmanCodeLengthTable::findMatch(std::size_t treeIndex, uint32_t code) const
+{
+    return mTree.findMatch(treeIndex, code);
+}
+
+unsigned HuffmanCodeLengthTable::getCodeLength(std::size_t index) const
+{
+    return mTree.getCodeLength(index);
+}
+
+void HuffmanCodeLengthTable::setInputLengthSequence(const std::vector<unsigned char>& sequence, bool targetDeflate)
+{
+    mTargetDeflate = targetDeflate;
+
+    if (targetDeflate)
+    {
+        mInputLengthSequence = std::vector<unsigned char>(DEFLATE_PERMUTATION_SIZE, 0);
+        for(unsigned idx=0; idx<sequence.size(); idx++)
+        {
+            mInputLengthSequence[mapToDeflateIndex(idx)] = sequence[idx];
+            //std::cout << "Got code length for " << mapToDeflateIndex(idx) << " of " << static_cast<unsigned>(sequence[idx]) << std::endl;
+        }
+    }
+    else
+    {
+        mInputLengthSequence = sequence;
+    }
+}

src/compression/huffman/HuffmanCodeLengthTable.h

@@ -0,0 +1,50 @@
+#pragma once
+
+#include "HuffmanTree.h"
+
+#include <vector>
+#include <string>
+#include <optional>
+
+class HuffmanCodeLengthTable
+{
+public:
+    void buildPrefixCodes();
+
+    void buildCompressedLengthSequence();
+
+    std::string dumpPrefixCodes() const;
+
+    std::optional<HuffmanTree::Symbol> findMatch(std::size_t treeIndex, uint32_t code) const;
+
+    const HuffmanTree& getTree() const;
+
+    const PrefixCode& getCode(std::size_t index) const;
+
+    using CompressedSequenceEntry = std::pair<unsigned, unsigned>;
+    const std::vector<CompressedSequenceEntry>& getCompressedLengthSequence() const;
+
+    const std::vector<unsigned> getCompressedLengthCounts() const;
+
+    unsigned getNumCodeLengths() const;
+
+    unsigned getCodeLength(std::size_t treeIndex) const;
+
+    unsigned mapToDeflateIndex(unsigned index) const;
+
+    void setInputLengthSequence(const std::vector<unsigned char>& sequence, bool targetDeflate = true);
+
+private:
+
+    HuffmanTree mTree;
+    bool mTargetDeflate{true};
+
+    std::vector<unsigned char> mInputLengthSequence;
+    std::vector<PrefixCode> mCodes;
+
+    std::vector<CompressedSequenceEntry> mCompressedLengthSequence;
+    std::vector<unsigned> mCompressedLengthCounts;
+
+    static constexpr unsigned DEFLATE_PERMUTATION_SIZE{19};
+    static constexpr unsigned DEFLATE_PERMUTATION[DEFLATE_PERMUTATION_SIZE]{16, 17, 18, 0, 8, 7, 9, 6, 10, 5, 11, 4, 12, 3, 13, 2, 14, 1, 15};
+};

src/compression/huffman/HuffmanEncoder.h

@@ -0,0 +1,67 @@
+#pragma once
+
+#include "RawTree.h"
+
+#include "HuffmanCodeLengthTable.h"
+#include "HuffmanFixedCodes.h"
+
+#include <vector>
+#include <unordered_map>
+
+class PrefixCodeGenerator
+{
+public:
+    virtual ~PrefixCodeGenerator() = default;
+    virtual const PrefixCode& getLiteralValue(unsigned char value) const = 0;
+
+    virtual const PrefixCode& getEndOfStreamValue() const = 0;
+
+};
+
+class HuffmanEncoder : public PrefixCodeGenerator
+{
+using DataStream = std::vector<unsigned char>;
+using CountPair = std::pair<unsigned char, unsigned>;
+
+public:
+    void encode(const DataStream& stream);
+    void encode(const std::unordered_map<unsigned char, unsigned>& counts);
+
+    void setUseFixedCode(bool useFixed)
+    {
+        mUseFixedCode = useFixed;
+    }
+
+    uint32_t getLengthValue(unsigned length)
+    {
+        return 0;
+    }
+
+    const PrefixCode& getLiteralValue(unsigned char value) const override
+    {
+        return mLiteralLengthTable.getCode(value);
+    }
+
+    const PrefixCode& getEndOfStreamValue() const override
+    {
+        return mLiteralLengthTable.getCode(256);
+    }
+
+    void initializeLiteralLengthTable()
+    {
+        if(mUseFixedCode)
+        {
+            mLiteralLengthTable.setInputLengthSequence(HuffmanFixedCodes::getDeflateFixedHuffmanCodes(), false);
+            mLiteralLengthTable.buildPrefixCodes();
+        }
+    }
+
+private:
+    void dumpTree(const RawTree<CountPair>& tree) const;
+    void dumpNode(RawNode<CountPair>* node, unsigned depth) const;
+
+    bool mUseFixedCode{false};
+    bool mTableIsInitialized{false};
+    HuffmanCodeLengthTable mLiteralLengthTable;
+    HuffmanCodeLengthTable mDistanceTable;
+};

src/compression/huffman/HuffmanFixedCodes.h

@@ -0,0 +1,20 @@
+#pragma once
+
+#include <vector>
+
+namespace HuffmanFixedCodes
+{
+    inline std::vector<unsigned char> getDeflateFixedHuffmanCodes()
+    {
+        std::vector<std::pair<unsigned, unsigned char> > mappings {{144, 8}, {112, 9}, {24, 7}, {8 ,8}};
+        std::vector<unsigned char> sequence;
+        for(const auto& entry : mappings)
+        {
+            for(unsigned idx=0;idx<entry.first;idx++)
+            {
+                sequence.push_back(entry.second);
+            }
+        }
+        return sequence;
+    }
+}

src/compression/huffman/HuffmanStream.cpp

@@ -0,0 +1,202 @@
+#include "HuffmanStream.h"
+
+#include "ByteUtils.h"
+#include "HuffmanFixedCodes.h"
+
+#include <iostream>
+#include <algorithm>
+#include <unordered_map>
+#include <sstream>
+
+HuffmanStream::HuffmanStream(BitStream* inputStream, BitStream* outputStream)
+    : mInputStream(inputStream),
+      mOutputStream(outputStream)
+{
+
+}
+
+void HuffmanStream::generateFixedCodeMapping()
+{
+    mUsingFixedCodes = true;
+    mCodeLengthTable.setInputLengthSequence(HuffmanFixedCodes::getDeflateFixedHuffmanCodes(), false);
+    mCodeLengthTable.buildPrefixCodes();
+}
+
+bool HuffmanStream::readNextCodeLengthSymbol(unsigned& final_symbol)
+{
+    if (mCodeLengthTable.getNumCodeLengths() == 0)
+    {
+        return false;
+    }
+
+    unsigned working_index{0};
+    auto length = mCodeLengthTable.getCodeLength(working_index);
+    auto delta = length;
+
+    bool found{false};
+    unsigned char buffer{0};
+    uint32_t working_bits{0};
+    unsigned working_symbol{0};
+
+    while(!found)
+    {
+        auto valid = mInputStream->readNextNBits(delta, buffer);
+        //std::cout << "Got buffer " << ByteUtils::toString(buffer) << std::endl;;
+
+        working_bits = working_bits | (buffer << (length - delta));
+        std::cout << "Read " << delta << " bits with length " << length << " and value " << ByteUtils::toString(working_bits) << std::endl;
+
+        if (const auto symbol = mCodeLengthTable.findMatch(working_index, working_bits))
+        {
+            found = true;
+            working_symbol = *symbol;
+        }
+        else
+        {
+            working_index++;
+            if (working_index >= mCodeLengthTable.getNumCodeLengths())
+            {
+                break;
+            }
+
+            auto new_length = mCodeLengthTable.getCodeLength(working_index);
+            delta = new_length - length;
+            length = new_length;
+        }
+    }
+
+    if (found)
+    {
+        final_symbol = working_symbol;
+        std::cout << "Found symbol " << working_symbol << " with bits " << ByteUtils::toString(working_bits) << std::endl;
+        std::cout << "At Byte offset " << mInputStream->getCurrentByteOffset() << " and bit offset " << mInputStream->getCurrentBitOffset() << std::endl;
+        return true;
+    }
+    else
+    {
+        std::cout << "SYMBOL NOT FOUND " << " with bits " << ByteUtils::toString(working_bits) << std::endl;
+        return false;
+    }
+}
+
+void HuffmanStream::readLiteralCodeLengths()
+{
+    std::vector<unsigned> lengths;
+    unsigned symbol{0};
+
+    while(lengths.size() < mNumLiterals)
+    {
+        bool valid = readNextCodeLengthSymbol(symbol);
+
+        if (!valid)
+        {
+            std::cout << "Hit unknown symbol - bailing out" << std::endl;
+            break;
+        }
+
+        if (symbol < 16)
+        {
+            lengths.push_back(symbol);
+        }
+        else if(symbol == 16)
+        {
+            unsigned char num_reps{0};
+            mInputStream->readNextNBits(2, num_reps);
+
+            auto last_val = lengths[lengths.size()-1];
+            std::cout << "Got val 16 doing " << 3 + num_reps << std::endl;
+            for(unsigned idx=0; idx< 3 + num_reps; idx++)
+            {
+                lengths.push_back(last_val);
+            }
+        }
+        else if(symbol == 17)
+        {
+            unsigned char num_reps{0};
+            mInputStream->readNextNBits(3, num_reps);
+
+            std::cout << "Got val 17 doing " << 3 + num_reps << std::endl;
+            for(unsigned idx=0; idx< 3 + num_reps; idx++)
+            {
+                lengths.push_back(0);
+            }
+        }
+        else if(symbol == 18)
+        {
+            unsigned char num_reps{0};
+            mInputStream->readNextNBits(7, num_reps);
+
+            std::cout << "Got val 18 doing " << 11 + num_reps << std::endl;
+            for(unsigned idx=0; idx< 11 + num_reps; idx++)
+            {
+                lengths.push_back(0);
+            }
+        }
+    }
+}
+
+bool HuffmanStream::decode()
+{
+    if (!mUsingFixedCodes)
+    {
+        readCodingsTable();
+    }
+    else
+    {
+        bool found_end_seq{false};
+        unsigned symbol{0};
+        while(!found_end_seq)
+        {
+            bool valid = readNextCodeLengthSymbol(symbol);
+
+            if (!valid)
+            {
+                std::cout << "Hit unknown symbol - bailing out" << std::endl;
+                break;
+            }
+
+            if (symbol == 256)
+            {
+                found_end_seq = true;
+                break;
+            }
+        }
+    }
+
+
+
+    return false;
+}
+
+void HuffmanStream::readCodingsTable()
+{
+    unsigned char h_lit{0};
+    mInputStream->readNextNBits(5, h_lit);
+    mNumLiterals = h_lit + 257;
+    std::cout << "Got HLIT " << mNumLiterals << std::endl;
+
+    unsigned char h_dist{0};
+    mInputStream->readNextNBits(5, h_dist);
+    mNumDistances = h_dist + 1;
+    std::cout << "Got HDIST " << mNumDistances << std::endl;
+
+    unsigned char h_clen{0};
+    mInputStream->readNextNBits(4, h_clen);
+
+    auto num_code_lengths = h_clen + 4;
+    std::cout << "Got HCLEN " << num_code_lengths << std::endl;
+
+    auto sequence = std::vector<unsigned char>(num_code_lengths, 0);
+    unsigned char buffer{0};
+    for(unsigned idx = 0; idx< num_code_lengths; idx++)
+    {
+        std::cout << "After codings " << mInputStream->logLocation();
+        mInputStream->readNextNBits(3, buffer);
+        sequence[idx] = buffer;
+    }
+
+    mCodeLengthTable.setInputLengthSequence(sequence, true);
+    mCodeLengthTable.buildPrefixCodes();
+
+    readLiteralCodeLengths();
+}

src/compression/huffman/HuffmanStream.h

@@ -0,0 +1,38 @@
+#pragma once
+
+#include "BitStream.h"
+#include "HuffmanCodeLengthTable.h"
+
+#include <vector>
+#include <string>
+
+
+class HuffmanStream
+{
+
+public:
+    HuffmanStream(BitStream* inputStream, BitStream* outputStream);
+
+    bool decode();
+
+    void generateFixedCodeMapping();
+
+    void setCodeLengthAlphabetLengths(const std::vector<unsigned char>& lengths);
+
+private:
+    void readCodingsTable();
+
+    void readLiteralCodeLengths();
+
+    bool readNextCodeLengthSymbol(unsigned& buffer);
+
+    BitStream* mInputStream;
+    BitStream* mOutputStream;
+
+    unsigned mNumLiterals{0}; // HLIT + 257
+    unsigned mNumDistances{0}; // HDIST + 1
+
+    bool mUsingFixedCodes{false};
+    HuffmanCodeLengthTable mCodeLengthTable;
+
+};

src/compression/huffman/HuffmanTree.cpp

@@ -0,0 +1,106 @@
+#include "HuffmanTree.h"
+
+#include "ByteUtils.h"
+
+#include <sstream>
+#include <algorithm>
+#include <iostream>
+
+PrefixCode::PrefixCode(uint32_t data, unsigned length)
+    : mLength(length)
+{
+    mData = ByteUtils::mirror(data, length);
+}
+
+bool PrefixCode::matches(unsigned length, uint32_t code) const
+{
+    return (mLength == length) && (mData == code);
+}
+
+std::string PrefixCode::toString(bool bitsAsRightToLeft) const
+{
+    if (bitsAsRightToLeft)
+    {
+        if (mLength <=8 )
+        {
+            return ByteUtils::toString(mData).substr(8 - mLength, mLength);
+        }
+        else
+        {
+            return ByteUtils::toString(mData, mLength);
+        }
+    }
+    else
+    {
+        if (mLength <=8 )
+        {
+            return ByteUtils::toString(ByteUtils::mirror(mData, mLength)).substr(0, mLength);
+        }
+        else
+        {
+            return ByteUtils::toString(mData, mLength);
+        }
+    }
+}
+
+void HuffmanTree::addCodeLengthEntry(unsigned length, const CodeSymbolPair& data)
+{
+    bool found{false};
+    for (auto& entry : mTable)
+    {
+        if (entry.first == length)
+        {
+            entry.second.push_back(data);
+            found = true;
+            break;
+        }
+    }
+
+    if (!found)
+    {
+        mTable.push_back({length, {data}});
+    }
+}
+
+void HuffmanTree::sortTable()
+{
+    std::sort(mTable.begin(), mTable.end(), [](CodeLengthData a, CodeLengthData b){return a.first < b.first;});
+}
+
+std::optional<HuffmanTree::Symbol> HuffmanTree::findMatch(std::size_t treeIndex, uint32_t code) const
+{
+    const auto& legth_data = mTable[treeIndex];
+    for(const auto& entry : legth_data.second)
+    {
+        //std::cout << "Checking if " << entry.second << " matches code " << ByteUtils::toString(code) << std::endl;;
+        if (entry.first.matches(legth_data.first, code))
+        {
+            return entry.second;
+        }
+    }
+    return std::nullopt;
+}
+
+std::size_t HuffmanTree::getNumCodeLengths() const
+{
+    return mTable.size();
+}
+
+unsigned HuffmanTree::getCodeLength(std::size_t idx) const
+{
+    return mTable[idx].first;
+}
+
+std::string HuffmanTree::dump(bool bitsAsRightToLeft) const
+{
+    std::stringstream sstr;
+    for (const auto& code_length_data : mTable)
+    {
+        sstr << "Prefix table for Code Length " << code_length_data.first << " has vals: \n";
+        for (const auto& entry : code_length_data.second)
+        {
+            sstr << "Code " << entry.first.toString(bitsAsRightToLeft) << " Symbol: " << entry.second << '\n';
+        }
+    }
+    return sstr.str();
+}

src/compression/huffman/HuffmanTree.h

@@ -0,0 +1,52 @@
+#pragma once
+
+#include <vector>
+#include <string>
+#include <optional>
+
+class PrefixCode
+{
+public:
+    PrefixCode(uint32_t data, unsigned length);
+
+    std::string toString(bool bitsAsRightToLeft = true) const;
+
+    bool matches(unsigned length, uint32_t code) const;
+
+    uint32_t getData() const
+    {
+        return mData;
+    }
+
+    unsigned getLength() const
+    {
+        return mLength;
+    }
+
+private:
+    unsigned mLength{0};
+    uint32_t mData{0};
+};
+
+class HuffmanTree
+{
+public:
+    using Symbol = unsigned;
+    using CodeLength = unsigned;
+    using CodeSymbolPair = std::pair<PrefixCode, Symbol>;
+    using CodeLengthData = std::pair<CodeLength, std::vector<CodeSymbolPair> >;
+
+    void addCodeLengthEntry(unsigned length, const CodeSymbolPair& data);
+
+    std::string dump(bool bitsAsRightToLeft = true) const;
+
+    std::optional<HuffmanTree::Symbol> findMatch(std::size_t treeIndex, uint32_t code) const;
+
+    std::size_t getNumCodeLengths() const;
+
+    unsigned getCodeLength(std::size_t idx) const;
+
+    void sortTable();
+private:
+    std::vector<CodeLengthData> mTable;
+};

src/core/ByteUtils.cpp

@@ -26,7 +26,20 @@ unsigned char ByteUtils::getByteN(uint32_t input, unsigned n)
     return (input << 8*n) >> 24;
 }
 
-unsigned char ByteUtils::getLowerNBits(unsigned char input, unsigned num)
+unsigned char ByteUtils::mirror(unsigned char byte, unsigned length)
+{
+    unsigned char ret{0};
+    for(unsigned idx=0; idx<length; idx++)
+    {
+        if (getBitN(byte, length - 1 - idx))
+        {
+            ret |= (0x01 << idx);
+        }
+    }
+    return ret;
+}
+
+unsigned char ByteUtils::getLowerNBits(uint32_t input, unsigned num)
 {
     switch (num)
     {
@@ -81,7 +94,7 @@ unsigned char ByteUtils::getMBitsAtN(unsigned char input, unsigned m, unsigned n
     }
 }
 
-unsigned char ByteUtils::getBitN(unsigned char input, unsigned n)
+bool ByteUtils::getBitN(uint32_t input, unsigned n)
 {
     return input & (1 << n);
 }
@@ -105,12 +118,34 @@ unsigned char ByteUtils::getFromString(const std::string& string)
     return ret;
 }
 
-std::string ByteUtils::toString(unsigned char c)
+std::string ByteUtils::toString(uint32_t input, unsigned length)
 {
     std::string ret;
-    for(unsigned idx=0; idx<8; idx++)
+    std::string working;
+    for(unsigned idx=0; idx<length; idx++)
     {
-        ret += getBitN(c, 7 - idx) ? '1' : '0';
+        if (idx > 0 && idx % 8 == 0)
+        {
+            if (ret.empty())
+            {
+                ret = working;
+            }
+            else
+            {
+                ret = working + '-' + ret;
+            }
+            working = "";
+        }
+        working += getBitN(input, 7 - idx) ? '1' : '0';
+    }
+
+    if (length <= 8)
+    {
+        ret = working;
+    }
+    else if(!working.empty())
+    {
+        ret = working + '-' + ret;
     }
     return ret;
 }

src/core/ByteUtils.h

@@ -21,17 +21,19 @@ public:
 
     static unsigned char getHigherNBits(unsigned char input, unsigned num);
 
-    static unsigned char getLowerNBits(unsigned char input, unsigned num);
+    static unsigned char getLowerNBits(uint32_t input, unsigned num);
 
     static unsigned char getTwoBitsAtN(unsigned char input, unsigned n);
 
     static unsigned char getMBitsAtN(unsigned char input, unsigned m, unsigned n);
 
-    static unsigned char getBitN(unsigned char input, unsigned n);
+    static bool getBitN(uint32_t input, unsigned n);
 
     static unsigned char getFromString(const std::string& string);
 
-    static std::string toString(unsigned char c);
+    static std::string toString(uint32_t input, unsigned length = 8);
+
+    static unsigned char mirror(unsigned char byte, unsigned length=0);
 
     static void ReverseBuffer(char* buffer, char* reverse, unsigned size, unsigned targetSize);
 

src/core/streams/BitStream.cpp

@@ -24,6 +24,7 @@ void BitStream::write(uint32_t data)
     unsigned num_bytes = sizeof(uint32_t);
     for(unsigned idx=0; idx<num_bytes;idx++)
     {
+        std::cout << "Writing byte " << idx << " for multibyte" << std::endl;
         writeByte(ByteUtils::getByteN(data, idx));
     }
 }
@@ -46,18 +47,70 @@ unsigned BitStream::getCurrentBitOffset() const
     return mBitOffset;
 }
 
+std::string BitStream::logLocation()
+{
+    std::stringstream sstr;
+    sstr << "Byte offset " << mByteOffset<< " | Bit offset " << mBitOffset;
+    sstr << " | Working byte " << ByteUtils::toString(getCurrentByte()) << '\n';
+    return sstr.str();
+}
+
 std::string BitStream::logNextNBytes(unsigned n) const
 {
     std::stringstream sstr;
     unsigned count{0};
     for(auto byte : peekNextNBytes(n))
     {
-        sstr << count << " | " << ByteUtils::toString(byte) + '\n';
+        sstr << mByteOffset + count << " | " << ByteUtils::toString(byte) + '\n';
         count++;
     }
     return sstr.str();
 }
 
+void BitStream::writeNBits(uint32_t data, unsigned length)
+{
+    const auto num_left = 8 - mBitOffset;
+    const int overshoot = length - num_left;
+
+    if (overshoot > 0)
+    {
+        unsigned char lower_bits = ByteUtils::getLowerNBits(data, num_left);
+        mCurrentByte |= lower_bits << mBitOffset;
+
+        writeByte(mCurrentByte, false);
+
+        auto num_bytes = overshoot / 8;
+        for (unsigned idx=0; idx< num_bytes; idx++)
+        {
+            mCurrentByte = ByteUtils::getMBitsAtN(data, overshoot, idx*8 + num_left);
+            writeByte(mCurrentByte, false);
+        }
+
+        if (const auto remainder = overshoot % 8; remainder > 0)
+        {
+            mCurrentByte = ByteUtils::getMBitsAtN(data, remainder, num_bytes*8 + num_left);
+            mBitOffset = remainder;
+        }
+        else
+        {
+            mCurrentByte = 0;
+            mBitOffset = 0;
+        }
+    }
+    else
+    {
+        mCurrentByte |= (static_cast<unsigned char>(data) << mBitOffset);
+        mBitOffset += length;
+        if (mBitOffset == 8)
+        {
+            writeByte(mCurrentByte, false);
+            mCurrentByte = 0;
+            mBitOffset = 0;
+        }
+    }
+
+}
+
 bool BitStream::readNextNBits(unsigned n, unsigned char& buffer)
 {
     if (mByteOffset < 0)

src/core/streams/BitStream.h

@@ -21,13 +21,17 @@ public:
 
     std::string logNextNBytes(unsigned n) const;
 
+    std::string logLocation();
+
     virtual std::vector<unsigned char> peekNextNBytes(unsigned n) const = 0;
 
     virtual bool readNextNBits(unsigned n, unsigned char& buffer);
 
     virtual std::optional<unsigned char> readNextByte() = 0;
 
-    virtual void writeByte(unsigned char data) = 0;
+    virtual void writeNBits(uint32_t data, unsigned length);
+
+    virtual void writeByte(unsigned char data, bool checkOverflow = true) = 0;
 
     void write(uint32_t data);
 
@@ -37,6 +41,11 @@ public:
 
     void resetOffsets()
     {
+        mEndByteOffset = mByteOffset;
+        mEndBitOffset = mBitOffset;
+        mEndByte = mCurrentByte;
+
+        mCurrentByte = 0;
         mByteOffset = -1;
         mBitOffset = 0;
     }
@@ -47,6 +56,20 @@ public:
         mCurrentByte = 0;
     }
 
+    void flushRemainingBits()
+    {
+        if (mBitOffset > 0)
+        {
+            writeByte(mCurrentByte, false);
+            mBitOffset = 0;
+        }
+    }
+
+    std::pair<unsigned char, unsigned> getRemainingBits() const
+    {
+        return {mEndByte, mEndBitOffset};
+    }
+
     void setChecksumCalculator(AbstractChecksumCalculator* calc)
     {
         mChecksumCalculator = calc;
@@ -60,8 +83,10 @@ public:
 protected:
     int mByteOffset{-1};
     unsigned mBitOffset{0};
-
     unsigned char mCurrentByte{0};
 
+    int mEndByteOffset{-1};
+    unsigned mEndBitOffset{0};
+    unsigned char mEndByte{0};
     AbstractChecksumCalculator* mChecksumCalculator{nullptr};
 };

src/core/streams/BufferBitStream.cpp

@@ -1,5 +1,7 @@
 #include "BufferBitStream.h"
 
+#include "ByteUtils.h"
+
 #include <iostream>
 
 bool BufferBitStream::isFinished() const
@@ -50,13 +52,27 @@ void BufferBitStream::setBuffer(const std::vector<unsigned char>& data)
     mBuffer = data;
 }
 
-void BufferBitStream::writeByte(unsigned char data)
+void BufferBitStream::writeByte(unsigned char data, bool checkOverflow)
 {
+    unsigned char out_byte{0};
+    if (checkOverflow && mBitOffset > 0)
+    {
+        out_byte = ByteUtils::getLowerNBits(mCurrentByte, mBitOffset);
+        out_byte |= data << mBitOffset;
+
+        mCurrentByte = ByteUtils::getHigherNBits(data, mBitOffset);
+    }
+    else
+    {
+        out_byte = data;
+    }
+
     if (mChecksumCalculator)
     {
-        mChecksumCalculator->addValue(data);
+        mChecksumCalculator->addValue(out_byte);
     }
-    mBuffer.push_back(data);
+    std::cout << "Writing byte " << ByteUtils::toString(out_byte) << " had bitoffset of " << mBitOffset << std::endl;
+    mBuffer.push_back(out_byte);
 }
 
 

src/core/streams/BufferBitStream.h

@@ -15,7 +15,7 @@ public:
 
     void setBuffer(const std::vector<unsigned char>& data);
 
-    void writeByte(unsigned char data) override;
+    void writeByte(unsigned char data, bool checkOverflow = true) override;
 
     void writeBytes(const std::vector<unsigned char> data) override
     {

src/core/streams/InputBitStream.cpp

@@ -29,7 +29,7 @@ std::optional<unsigned char> InputBitStream::readNextByte()
     }
 }
 
-void InputBitStream::writeByte(unsigned char data)
+void InputBitStream::writeByte(unsigned char data, bool checkOverflow )
 {
 
 }

src/core/streams/InputBitStream.h

@@ -14,7 +14,7 @@ class InputBitStream : public BitStream
 
     std::optional<unsigned char> readNextByte() override;
 
-    void writeByte(unsigned char data) override;
+    void writeByte(unsigned char data, bool checkOverflow = true) override;
 
     void writeBytes(const std::vector<unsigned char> data) override
     {

src/core/streams/OutputBitStream.cpp

@@ -22,7 +22,7 @@ std::optional<unsigned char> OutputBitStream::readNextByte()
     return std::nullopt;
 }
 
-void OutputBitStream::writeByte(unsigned char data)
+void OutputBitStream::writeByte(unsigned char data, bool checkOverflow )
 {
     (*mStream) << data;
 }

src/core/streams/OutputBitStream.h

@@ -15,7 +15,7 @@ public:
 
     std::optional<unsigned char> readNextByte() override;
 
-    void writeByte(unsigned char data) override;
+    void writeByte(unsigned char data, bool checkOverflow = true) override;
 
     void writeBytes(const std::vector<unsigned char> data) override;
 

src/image/ImageBitStream.cpp

@@ -29,7 +29,7 @@ std::optional<unsigned char> ImageBitStream::readNextByte()
     return val;
 }
 
-void ImageBitStream::writeByte(unsigned char data)
+void ImageBitStream::writeByte(unsigned char data, bool checkOverflow )
 {
     mByteOffset++;
 

src/image/ImageBitStream.h

@@ -15,7 +15,7 @@ public:
 
     std::optional<unsigned char> readNextByte() override;
 
-    void writeByte(unsigned char data) override;
+    void writeByte(unsigned char data, bool checkOverflow = true) override;
 
     void writeBytes(const std::vector<unsigned char> data) override
     {

src/image/png/PngWriter.cpp

@@ -30,6 +30,11 @@ std::unique_ptr<PngWriter> PngWriter::Create()
     return std::make_unique<PngWriter>();
 }
 
+void PngWriter::setCompressionMethod(Deflate::CompressionMethod method)
+{
+    mCompressionMethod = method;
+}
+
 void PngWriter::setPath(const Path& path)
 {
     mPath = path;
@@ -91,6 +96,7 @@ void PngWriter::writeHeader()
 
 void PngWriter::writeEndChunk()
 {
+    std::cout << "Start writing end chunk" << std::endl;
     unsigned length{0};
     mOutStream->write(length);
 
@@ -145,6 +151,7 @@ void PngWriter::writeDataChunks(const BufferBitStream& buffer)
         auto crc = crc_check.getChecksum();
         std::cout << "Writing idat crc" << crc << std::endl;
         mOutStream->write(crc);
+        std::cout << "Finished Writing idat crc" << crc << std::endl;
     }
 }
 
@@ -192,12 +199,17 @@ void PngWriter::write(const std::unique_ptr<Image<unsigned char> >& image)
         lz77_out_stream = std::make_unique<BufferBitStream>();
         Lz77Encoder lz77_encoder(filter_out_stream.get(), lz77_out_stream.get());
 
+        if (mCompressionMethod == Deflate::CompressionMethod::DYNAMIC_HUFFMAN)
+        {
+            // Set up custom encoder;
+        }
         lz77_encoder.encode();
         lz77_out_stream->resetOffsets();
     }
 
     BufferBitStream zlib_out_stream;
     ZlibEncoder zlib_encoder(lz77_out_stream.get(), &zlib_out_stream);
+    zlib_encoder.setDeflateCompressionMethod(mCompressionMethod);
     zlib_encoder.encode();
     zlib_out_stream.resetOffsets();
 

src/image/png/PngWriter.h

@@ -22,6 +22,8 @@ public:
 
     static std::unique_ptr<PngWriter> Create();
 
+    void setCompressionMethod(Deflate::CompressionMethod method);
+
     void setPath(const Path& path);
 
     void setPngInfo(const PngInfo& info);

test/CMakeLists.txt

@@ -18,6 +18,7 @@ list(APPEND TestFiles
             compiler/TestLexer.cpp
             compiler/TestTemplatingEngine.cpp
             compression/TestStreamCompressor.cpp
+            compression/TestHuffmanStream.cpp
             database/TestDatabase.cpp
             fonts/TestFontReader.cpp
             graphics/TestRasterizer.cpp

test/compression/TestHuffmanStream.cpp

@@ -0,0 +1,60 @@
+#include <iostream>
+
+#include "HuffmanStream.h"
+
+
+void testHuffmanCodeLengthTable()
+{
+    HuffmanCodeLengthTable table;
+
+    std::vector<std::pair<unsigned, unsigned char> > mappings {{144, 8}, {112, 9}, {24, 7}, {8 ,8}};
+    std::vector<unsigned char> code_length_sequence;
+    for(const auto& entry : mappings)
+    {
+        for(unsigned idx=0;idx<entry.first;idx++)
+        {
+            code_length_sequence.push_back(entry.second);
+        }
+    }
+    table.setInputLengthSequence(code_length_sequence, false);
+
+    table.buildCompressedLengthSequence();
+
+    auto compressed_sequence = table.getCompressedLengthSequence();
+    for (auto entry : compressed_sequence)
+    {
+        std::cout << "Count " << entry.first << " extra bits " << entry.second << std::endl;
+    }
+
+    auto compressed_lengths = table.getCompressedLengthCounts();
+    for(unsigned idx = 0; idx<compressed_lengths.size(); idx++)
+    {
+        std::cout << "Slot " << idx << " length " << compressed_lengths[idx] << std::endl;
+    }
+
+}
+
+
+int main()
+{
+    testHuffmanCodeLengthTable();
+    //HuffmanStream stream(nullptr, nullptr);
+
+    //stream.setCodeLengthAlphabetLengths({3, 3, 3, 3, 3, 2, 4, 4});
+
+    //stream.setCodeLengthAlphabetLengths({2, 2, 3, 3, 3, 3});
+
+    //stream.buildCodeLengthMapping();
+
+    std::cout << "*******" << std::endl;
+    //stream.setCodeLengthAlphabetLengths({4, 0, 6, 7, 3, 2, 4, 2, 7, 4, 6, 3, 0, 6});
+
+    //stream.buildCodeLengthMapping();
+
+    //const auto mapping = stream.getCodeLengthMapping();
+
+    //stream.generateFixedCodeMapping();
+
+
+    return 0;
+}

test/core/TestBitStream.cpp

@@ -3,9 +3,13 @@
 
 #include <iostream>
 
-int main()
+void testReading()
 {
-    std::vector<std::string> bytes{"11100101", "00110101", "00010001"};
+    std::vector<std::string> bytes{
+        "11101101",
+        "01011101",
+        "00001001",
+        "01111111"};
 
     BufferBitStream stream;
     for(const auto& byte : bytes)
@@ -14,17 +18,67 @@ int main()
     }
 
     unsigned char buffer{0} ;
-    auto valid = stream.readNextNBits(3, buffer);
+    auto valid = stream.readNextNBits(1, buffer);
     std::cout << "Slice0 is " << ByteUtils::toString(buffer) << std::endl;
 
-    valid = stream.readNextNBits(3, buffer);
+    valid = stream.readNextNBits(2, buffer);
     std::cout << "Slice1 is " << ByteUtils::toString(buffer) << std::endl;
 
     valid = stream.readNextNBits(5, buffer);
     std::cout << "Slice2 is " << ByteUtils::toString(buffer) << std::endl;
 
-    valid = stream.readNextNBits(7, buffer);
+    valid = stream.readNextNBits(5, buffer);
     std::cout << "Slice3 is " << ByteUtils::toString(buffer) << std::endl;
 
+    valid = stream.readNextNBits(4, buffer);
+    std::cout << "Slice3 is " << ByteUtils::toString(buffer) << " and int " << static_cast<int>(buffer) << std::endl;
+
+    valid = stream.readNextNBits(3, buffer);
+    std::cout << "Slice3 is " << ByteUtils::toString(buffer) << std::endl;
+}
+
+void testWriting()
+{
+    BufferBitStream stream;
+
+    stream.writeByte(ByteUtils::getFromString("01100000"));
+
+    auto bits0 = ByteUtils::getFromString("00000111");
+    stream.writeNBits(bits0, 3);
+
+    stream.writeByte(ByteUtils::getFromString("11110000"));
+
+    auto bits1 = ByteUtils::getFromString("01001101");
+    stream.writeNBits(bits1, 7);
+
+    stream.writeByte(ByteUtils::getFromString("11110000"));
+
+    auto bits2 = ByteUtils::getFromString("00000001");
+    stream.writeNBits(bits2, 1);
+
+    stream.flushRemainingBits();
+
+    stream.resetOffsets();
+
+    auto byte0 = ByteUtils::toString(*stream.readNextByte());
+    auto byte1 = ByteUtils::toString(*stream.readNextByte());
+    auto byte2 = ByteUtils::toString(*stream.readNextByte());
+    auto byte3 = ByteUtils::toString(*stream.readNextByte());
+    auto byte4 = ByteUtils::toString(*stream.readNextByte());
+
+    std::cout << "Got bytes 0 " << byte0 << std::endl;
+    std::cout << "Got bytes 1 " << byte1 << std::endl;
+    std::cout << "Got bytes 2 " << byte2 << std::endl;
+    std::cout << "Got bytes 3 " << byte3 << std::endl;
+    std::cout << "Got bytes 4 " << byte4 << std::endl;
+}
+
+
+int main()
+{
+    //testReading()
+
+    testWriting();
+
     return 0;
 }

test/core/TestByteUtils.cpp

@@ -24,5 +24,10 @@ int main()
     std::cout << "Byte2 is " << ByteUtils::toString(byte2) << std::endl;
     std::cout << "Byte3 is " << ByteUtils::toString(byte3) << std::endl;
 
+    std::cout << "Mirroring" << std::endl;
+
+    auto out = ByteUtils::mirror(byte);
+    std::cout << "Mirror is " << ByteUtils::toString(out) << std::endl;
+
     return 0;
 }

test/image/TestPngReader.cpp

@@ -5,25 +5,43 @@
 #include "Image.h"
 #include <iostream>
 
-int main()
+void testThirdParty()
 {
     //const auto path = "/home/jmsgrogan/Downloads/test.png";
 
-    //const auto path = "/home/jmsgrogan/Downloads/index.png";
+    const auto path = "/home/jmsgrogan/Downloads/index.png";
 
-    const auto path = "/home/jmsgrogan/code/MediaTool-build/bin/test.png";
+    //const auto path = "/home/jmsgrogan/code/MediaTool-build/bin/test.png";
 
-    File file(path);
+    //File file(path);
-    std::cout << file.dumpBinary();
+    //std::cout << file.dumpBinary();
 
     PngReader reader;
     reader.setPath(path);
     auto image = reader.read();
 
-    for(unsigned idx=0; idx<image->getWidth()*image->getBytesPerRow(); idx++)
+    //for(unsigned idx=0; idx<image->getWidth()*image->getBytesPerRow(); idx++)
-    {
+    //{
-        std::cout << "Image val: " << idx << " | " << static_cast<int>(image->getDataRef()[idx]) << std::endl;
+       // std::cout << "Image val: " << idx << " | " << static_cast<int>(image->getDataRef()[idx]) << std::endl;
-    }
+    //}
+}
+
+void testFixedCode()
+{
+    const auto path = "/home/jmsgrogan/code/MediaTool-build/bin/test_fixed.png";
+
+    //File file(path);
+    //std::cout << file.dumpBinary();
+
+    PngReader reader;
+    reader.setPath(path);
+    auto image = reader.read();
+}
+
+int main()
+{
+    testThirdParty();
+    //testFixedCode();
 
     return 0;
 }

test/image/TestPngWriter.cpp

@@ -3,11 +3,12 @@
 
 #include "File.h"
 #include "BitStream.h"
+#include "ByteUtils.h"
 #include "ImagePrimitives.h"
 
 #include <iostream>
 
-int main()
+void testCompressedPng()
 {
     unsigned width = 20;
     unsigned height = 20;
@@ -26,11 +27,11 @@ int main()
     image->setData(data);
 
     PngWriter writer;
-    writer.setPath("test.png");
+    writer.setPath("test_compressed.png");
     writer.write(image);
 
-    return 0;
+    return;
-    File test_file("test.png");
+    File test_file("test_compressed.png");
     test_file.SetAccessMode(File::AccessMode::Read);
     test_file.Open(true);
 
@@ -39,6 +40,41 @@ int main()
         std::cout << static_cast<unsigned>(*byte) << std::endl;
     }
     test_file.Close();
+}
 
+void testFixedPng()
+{
+    unsigned width = 10;
+    unsigned height = 10;
+    unsigned numChannels = 1;
+    auto image = Image<unsigned char>::Create(width, height);
+    image->setNumChannels(numChannels);
+    image->setBitDepth(8);
+
+    std::vector<unsigned char> data(width*height, 0);
+    for (unsigned idx=0; idx<width*height; idx++)
+    {
+        //unsigned char val = 100 * idx /(width*height);
+        unsigned char val = 10;
+        data[idx] = val;
+    }
+
+    image->setData(data);
+
+    PngWriter writer;
+    writer.setPath("test_fixed.png");
+    writer.setCompressionMethod(Deflate::CompressionMethod::FIXED_HUFFMAN);
+    writer.write(image);
+
+    //return;
+    File test_file("test_fixed.png");
+    std::cout << test_file.dumpBinary();
+
+}
+
+int main()
+{
+    //testCompressedPng();
+    testFixedPng();
     return 0;
 }